Stem-loop aae-mir-210

Accession

MI0013499

Description

Aedes aegypti aae-mir-210 precursor miRNA

Literature search

7 open access papers mention aae-mir-210
(24 sentences)

Sequence

176362 reads, 1242.0 reads per million, 74 experiments

cucauugcAGCUGCUGACCACUGCACAAGAUUagauuaugacuCUUGUGCGUGUGACAACGGCUAUUg
........(((((.((..(((((((((((((((.....))).))))))))).))).)).)))))....

Structure

cucauugc     C  AC   -         -   g 
        AGCUG UG  CAC UGCACAAGA UUa a
        ||||| ||  ||| ||||||||| ||| u
        UCGGC AC  GUG GCGUGUUCu agu u
----gUUA     A  -A   U         c   a 

Annotation confidence High

Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context

ref|NW_001811255.1|: 515644-515711 [-]

Mature aae-miR-210-5p

• Accession: MIMAT0057352
• Description: Aedes aegypti aae-miR-210-5p mature miRNA
• Sequence: 9 - AGCUGCUGACCACUGCACAAGAUU - 32
• Evidence: experimental ; 454 [1], Illumina [2]

Mature aae-miR-210-3p

• Accession: MIMAT0014293
• Description: Aedes aegypti aae-miR-210-3p mature miRNA
• Sequence: 44 - CUUGUGCGUGUGACAACGGCUAUU - 67
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581


2. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119