Stem-loop aae-mir-307

Accession

MI0013501

Description

Aedes aegypti aae-mir-307 precursor miRNA

Literature search

2 open access papers mention aae-mir-307
(2 sentences)

Sequence

6773 reads, 73.0 reads per million, 77 experiments

cuaguuucccggcagucgaucACUCACUCAACCUGGGUGUGAUgcuuauuugaaucauCACAACCUCCUUGAGUGAGCGAccgauugaugg
........(((.((((((.((.(((((((((...((.(((((((.((.....)).))))))).))...))))))))).)).)))))).)))

Structure

cuaguuuc   g      a  A         CCU  G       c  a 
        ccg cagucg uc CUCACUCAA   GG UGUGAUg uu u
        ||| |||||| || |||||||||   || ||||||| || u
        ggu guuagc AG GAGUGAGUU   CC ACACuac aa u
--------   a      c  C         CCU  A       u  g 

Annotation confidence Medium

Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context

ref|NW_001810458.1|: 1859419-1859509 [-]

Mature aae-miR-307-5p

• Accession: MIMAT0057353
• Description: Aedes aegypti aae-miR-307-5p mature miRNA
• Sequence: 22 - ACUCACUCAACCUGGGUGUGAU - 43
• Evidence: experimental ; 454 [1], Illumina [2]

Mature aae-miR-307-3p

• Accession: MIMAT0014296
• Description: Aedes aegypti aae-miR-307-3p mature miRNA
• Sequence: 59 - CACAACCUCCUUGAGUGAGCGA - 80
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581


2. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119