Stem-loop aae-mir-1000-2

Accession

MI0013503

Description

Aedes aegypti aae-mir-1000-2 precursor miRNA

Literature search

3 open access papers mention aae-mir-1000-2
(16 sentences)

Sequence

48619 reads, 213.0 reads per million, 80 experiments

cgauuuuugcuagaaaccgauuAUAUUGUCCUGUCACAGCAGUacuguuacaaauuUACUGUUGUUUCGGGACAUUUAcauugauucuagccgucac
........(((((((..((((.....(((((((..(((((((((............)))))))))..))))))).....)))).)))))))......

Structure

cgauuuuu       ac    uAUAU       UC         cuguu 
        gcuagaa  cgau     UGUCCUG  ACAGCAGUa     a
        |||||||  ||||     |||||||  |||||||||      
        cgaucuu  guua     ACAGGGC  UGUUGUCAU     c
--cacugc       -a    cAUUU       UU         uuaaa 

Annotation confidence Medium

Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context

ref|NW_001835655.1|: 170-266 [-]

Mature aae-miR-1000-5p

• Accession: MIMAT0014297
• Description: Aedes aegypti aae-miR-1000-5p mature miRNA
• Sequence: 23 - AUAUUGUCCUGUCACAGCAGU - 43
• Evidence: experimental ; 454 [1], Illumina [2]

Mature aae-miR-1000-3p

• Accession: MIMAT0057354
• Description: Aedes aegypti aae-miR-1000-3p mature miRNA
• Sequence: 57 - UACUGUUGUUUCGGGACAUUUA - 78
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581


2. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119