Stem-loop aae-mir-iab-4-2

Accession

MI0013531

Description

Aedes aegypti aae-mir-iab-4-2 precursor miRNA

Sequence

123 reads, 6 reads per million, 2 experiments

gcuucaugaACGUAUACUGAAUGUAUCCUGAgugcuaucuaucCGGUAUACCUUCAGUAUACGUAACaggaggc
(((((.((.((((((((((((.((((((.((..(....)..)).)).)))).))))))))))))..)).)))))

Structure

     a  -a            U    -  U  gu c 
gcuuc ug  ACGUAUACUGAA GUAU CC GA  g u
||||| ||  |||||||||||| |||| || ||  |  
cggag aC  UGCAUAUGACUU CAUA GG cu  c a
     g  AA            C    U  C  au u 

Annotation confidence Low

Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context

supercont1.708: 50256-50329 [+]

Mature aae-miR-iab-4-5p

• Accession: MIMAT0014278
• Description: Aedes aegypti aae-miR-iab-4-5p mature miRNA
• Sequence: 10 - ACGUAUACUGAAUGUAUCCUGA - 31
• Evidence: experimental ; 454 [1], Illumina [2]

Mature aae-miR-iab-4-3p

• Accession: MIMAT0016977
• Description: Aedes aegypti aae-miR-iab-4-3p mature miRNA
• Sequence: 44 - CGGUAUACCUUCAGUAUACGUAAC - 67
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581


2. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119