Stem-loop hsa-mir-3200

Accession

MI0014249

Symbol

HGNC: MIR3200

Description

Homo sapiens hsa-mir-3200 precursor miRNA mir-3200

Gene
family

RF03405; mir-3200

Literature search

3 open access papers mention hsa-mir-3200
(12 sentences)

Sequence

2739 reads, 69 reads per million, 104 experiments

gguggucgagggAAUCUGAGAAGGCGCACAAGGUuuguguccaauacaguccaCACCUUGCGCUACUCAGGUCUGcucgugcccu
((.(((((((.(.(((((((..((((((..((((((((((...)))))).....)))))))))).))))))).).)))).)))))

Structure

  u   -    g A       AA      CA    -----      c 
gg ggu cgag g AUCUGAG  GGCGCA  AGGU     uugugu  
|| ||| |||| | |||||||  ||||||  ||||     |||||| c
uc ccg gcuc U UGGACUC  UCGCGU  UCCA     gacaua  
  -   u    G C       -A      --    Caccu      a 

Annotation confidence High

Genome context

chr22: 30731557-30731641 [+]

Disease association

hsa-mir-3200 is associated with one or more human diseases in the Human microRNA Disease Database

Mature hsa-miR-3200-5p

• Accession: MIMAT0017392
• Description: Homo sapiens hsa-miR-3200-5p mature miRNA
• Sequence: 13 - AAUCUGAGAAGGCGCACAAGGU - 34
• Evidence: experimental ; Illumina [2-3,5], Northern [4]

Mature hsa-miR-3200-3p

• Accession: MIMAT0015085
• Description: Homo sapiens hsa-miR-3200-3p mature miRNA
• Sequence: 54 - CACCUUGCGCUACUCAGGUCUG - 75
• Evidence: experimental ; Illumina [1-3,5], Northern [4]

References

1. PubMed ID: 20300190
   Characterization of the Melanoma miRNAome by Deep Sequencing
   "Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK"
   "PLoS One (2010) 5:e9685


2. PubMed ID: 20224791
   Discovery of novel microRNAs in female reproductive tract using next generation sequencing
   Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM, Gunaratne PH
   PLoS One (2010) 5:e9637


3. PubMed ID: 20532037
   Re-inspection of small RNA sequence datasets reveals several novel human miRNA genes
   Hansen TB, Bramsen JB, Kjems J
   PLoS One (2010) 5:e10961


4. PubMed ID: 20459774
   Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls
   Witten D, Tibshirani R, Gu SG, Fire A, Lui WO
   BMC Biol (2010) 8:58


5. PubMed ID: 21199797
   Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene
   "Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C"
   "Cancer Res (2011) 71:78-86