Stem-loop bdi-MIR5181c

Accession

MI0025306

Description

Brachypodium distachyon bdi-MIR5181c precursor miRNA

Literature search

1 open access papers mention bdi-MIR5181c
(2 sentences)

Sequence

7110 reads, 45.0 reads per million, 21 experiments

aaacuauacucccuccgguccacAAUAAGUGUCUCGGAUUUAGUACuaaguuaguacaaaaucugaaacACUUCUUAUGGAUUGUAGGGAguagaaucuu
......((((((((.(((((((.((.((((((.((((((((.((((((...)))))).)))))))).)))))).)).))))))).)))))))).......

Structure

-aaacua        c       c  U      C        A      a 
       uacucccu cggucca AA AAGUGU UCGGAUUU GUACua  
       |||||||| ||||||| || |||||| |||||||| |||||| g
       augAGGGA GUUAGGU UU UUCAca agucuaaa caugau  
uucuaag        U       A  C      a        a      u 

Annotation confidence Low

Genome context

2: 22827665-22827764 [-]

Mature bdi-miR5181c-5p

• Accession: MIMAT0030107
• Description: Brachypodium distachyon bdi-miR5181c-5p mature miRNA
• Sequence: 24 - AAUAAGUGUCUCGGAUUUAGUAC - 46
• Evidence: experimental ; Illumina [1-2]

Mature bdi-miR5181c-3p

• Accession: MIMAT0030108
• Description: Brachypodium distachyon bdi-miR5181c-3p mature miRNA
• Sequence: 70 - ACUUCUUAUGGAUUGUAGGGA - 90
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443


2. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145