Stem-loop aga-mir-998

Accession

MI0033334

Description

Anopheles gambiae aga-mir-998 precursor miRNA

Literature search

3 open access papers mention aga-mir-998
(11 sentences)

Sequence

1709 reads, 145.0 reads per million, 24 experiments

GCUGAACUCUCGUGGGUCUGCaguauuuacaagcggccacaucguucaugUAGCACCAUGAGAUUCAGCUC
((((((.((((((((..(((((.........(((((.....)))))..)))))..))))))))))))))..

Structure

--      C        GU     guauuuaca     c 
  GCUGAA UCUCGUGG  CUGCa         agcgg c
  |||||| ||||||||  |||||         ||||| a
  CGACUU AGAGUACC  GAUgu         uugcu c
CU      -        AC     -------ac     a 

Annotation confidence High

Genome context

ref|NC_064601.1|: 12768908-12768978 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from aga-mir-998

Mature aga-miR-998-5p

• Accession: MIMAT0041499
• Description: Anopheles gambiae aga-miR-998-5p mature miRNA
• Sequence: 1 - GCUGAACUCUCGUGGGUCUGC - 21
• Evidence: experimental ; Illumina [1]

Mature aga-miR-998-3p

• Accession: MIMAT0041500
• Description: Anopheles gambiae aga-miR-998-3p mature miRNA
• Sequence: 51 - UAGCACCAUGAGAUUCAGCUC - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25766668
   The germline of the malaria mosquito produces abundant miRNAs, endo-siRNAs, piRNAs and 29-nt small RNAs
   Castellano L, Rizzi E, Krell J, Di Cristina M, Galizi R, Mori A, Tam J, De Bellis G, Stebbing J, Crisanti A, Nolan T
   BMC Genomics (2015) 16:100