Stem-loop aga-mir-2c

Accession

MI0033385

Description

Anopheles gambiae aga-mir-2c precursor miRNA

Literature search

6 open access papers mention aga-mir-2c
(30 sentences)

Sequence

13936 reads, 794.0 reads per million, 24 experiments

cggacugggCUCAUCAAUUGGUUGUGGCUAUGuguuuaucaccaaauaaaccggacucguuuuccgcuauucacuaucaUAUCACAGCCAUUUUGAUGAGCUCggucgg
..(((((((((((((((.(((((((((.((((.((((((......))))))((((.......))))...........)))))))))))))..)))))))))))))))..

Structure

cg               -U         C    -------------------------u      ca 
  gacugggCUCAUCAA  UGGUUGUGG UAUG                          guuuau  c
  |||||||||||||||  ||||||||| ||||                          ||||||   
  cuggCUCGAGUAGUU  ACCGACACU AUac                          caaaua  c
gg               UU         -    uaucacuuaucgccuuuugcucaggc      aa 

Annotation confidence High

Genome context

ref|NC_064601.1|: 106557246-106557354 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from aga-mir-2c

Mature aga-miR-2c-5p

• Accession: MIMAT0041578
• Description: Anopheles gambiae aga-miR-2c-5p mature miRNA
• Sequence: 10 - CUCAUCAAUUGGUUGUGGCUAUG - 32
• Evidence: experimental ; Illumina [1]

Mature aga-miR-2c-3p

• Accession: MIMAT0041579
• Description: Anopheles gambiae aga-miR-2c-3p mature miRNA
• Sequence: 80 - UAUCACAGCCAUUUUGAUGAGCUC - 103
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25766668
   The germline of the malaria mosquito produces abundant miRNAs, endo-siRNAs, piRNAs and 29-nt small RNAs
   Castellano L, Rizzi E, Krell J, Di Cristina M, Galizi R, Mori A, Tam J, De Bellis G, Stebbing J, Crisanti A, Nolan T
   BMC Genomics (2015) 16:100