Stem-loop aga-mir-2c

Accession

MI0033385

Description

Anopheles gambiae aga-mir-2c precursor miRNA

Literature search

2 open access papers mention aga-mir-2c
(14 sentences)

Sequence

cggacuggGCUCAUCAAUUGGUUGUGGCUauguguuuaucaccaaauaaaccggacucguuuuccgcuauucacuaucaUAUCACAGCCAUUUUGAUGAGCucggucgg
..(((((((((((((((.(((((((((.((((.((((((......))))))((((.......))))...........)))))))))))))..)))))))))))))))..

Structure

cg               -U         C    -------------------------u      ca 
  gacuggGCUCAUCAA  UGGUUGUGG Uaug                          guuuau  c
  |||||||||||||||  ||||||||| ||||                          ||||||   
  cuggcuCGAGUAGUU  ACCGACACU AUac                          caaaua  c
gg               UU         -    uaucacuuaucgccuuuugcucaggc      aa 

Annotation confidence Low

Genome context

chr2L: 37758085-37758193 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from aga-mir-2c

Mature aga-miR-2c-5p

• Accession: MIMAT0041578
• Description: Anopheles gambiae aga-miR-2c-5p mature miRNA
• Sequence: 9 - GCUCAUCAAUUGGUUGUGGCU - 29
• Evidence: experimental ; Illumina [1]

Mature aga-miR-2c-3p

• Accession: MIMAT0041579
• Description: Anopheles gambiae aga-miR-2c-3p mature miRNA
• Sequence: 80 - UAUCACAGCCAUUUUGAUGAGC - 101
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25766668
   The germline of the malaria mosquito produces abundant miRNAs, endo-siRNAs, piRNAs and 29-nt small RNAs
   Castellano L, Rizzi E, Krell J, Di Cristina M, Galizi R, Mori A, Tam J, De Bellis G, Stebbing J, Crisanti A, Nolan T
   BMC Genomics (2015) 16:100