Stem-loop oni-mir-10b

Accession

MI0034520

Description

Oreochromis niloticus oni-mir-10b precursor miRNA

Literature search

2 open access papers mention oni-mir-10b
(19 sentences)

Sequence

2140942 reads, 4143.0 reads per million, 108 experiments

UACCCUGUAGAACCGAAUGUGUguggagcugccucagucaCAGAUUGGGUUCUUGGGGAGUC
..(((((.((((((.(((.((((..(((....)))...)))).))).)))))))))))....

Structure

--UA     U      G   G    -ug   c 
    CCCUG AGAACC AAU UGUg   gag u
    ||||| |||||| ||| ||||   |||  
    GGGGU UCUUGG UUA ACac   cuc g
CUGA     -      G   G    uga   c 

Annotation confidence High

Genome context

CM001456.1: 2263607-2263668 [-]

Mature oni-miR-10b-5p

• Accession: MIMAT0042643
• Description: Oreochromis niloticus oni-miR-10b-5p mature miRNA
• Sequence: 1 - UACCCUGUAGAACCGAAUGUGU - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-10b-3p

• Accession: MIMAT0059288
• Description: Oreochromis niloticus oni-miR-10b-3p mature miRNA
• Sequence: 41 - CAGAUUGGGUUCUUGGGGAGUC - 62
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774