Stem-loop oni-mir-182

Accession

MI0034524

Description

Oreochromis niloticus oni-mir-182 precursor miRNA

Sequence

913151 reads, 2516.0 reads per million, 105 experiments

UUUGGCAAUGGUAGAACUCACAcuggugagguagauggauccggUGGUUCUAGACUUGCCAACU
.(((((((...((((((...((((((..............))))))))))))...)))))))..

Structure

-U       UGG      UCA      ugaggu 
  UUGGCAA   UAGAAC   CAcugg      a
  |||||||   ||||||   ||||||       
  AACCGUU   AUCUUG   GUggcc      g
UC       CAG      ---      uaggua 

Annotation confidence High

Genome context

CM001460.1: 22507670-22507733 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from oni-mir-182

Mature oni-miR-182-5p

• Accession: MIMAT0042646
• Description: Oreochromis niloticus oni-miR-182-5p mature miRNA
• Sequence: 1 - UUUGGCAAUGGUAGAACUCACA - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-182-3p

• Accession: MIMAT0059291
• Description: Oreochromis niloticus oni-miR-182-3p mature miRNA
• Sequence: 45 - UGGUUCUAGACUUGCCAACU - 64
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774