Stem-loop oni-mir-199a-2

Accession

MI0034532

Description

Oreochromis niloticus oni-mir-199a-2 precursor miRNA

Sequence

29355738 reads, 24363.0 reads per million, 116 experiments

CCCAGUGUUCAGACUACCUGUUCauugucauacugguguACAGUAGUCUGCACAUUGGUU
.(((((((.((((((((.(((.((((........)))).))))))))))).)))))))..

Structure

-C       U        C   U    guc 
  CCAGUGU CAGACUAC UGU Cauu   a
  ||||||| |||||||| ||| ||||    
  GGUUACA GUCUGAUG ACA gugg   u
UU       C        -   u    uca 

Annotation confidence High

Genome context

GL831264.1: 905753-905812 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from oni-mir-199a-2

Mature oni-miR-199a-5p

• Accession: MIMAT0059298
• Description: Oreochromis niloticus oni-miR-199a-5p mature miRNA
• Sequence: 1 - CCCAGUGUUCAGACUACCUGUUC - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-199a-3p

• Accession: MIMAT0042650
• Description: Oreochromis niloticus oni-miR-199a-3p mature miRNA
• Sequence: 40 - ACAGUAGUCUGCACAUUGGUU - 60
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774