Stem-loop oni-mir-199a-3

Accession

MI0034533

Description

Oreochromis niloticus oni-mir-199a-3 precursor miRNA

Sequence

29342972 reads, 24343.0 reads per million, 116 experiments

CCCAGUGUUCAGACUACCUGUUCaggaaguagugguuguACAGUAGUCUGCACAUUGGUU
.(((((((.((((((((.(((.(((..........))).))))))))))).)))))))..

Structure

-C       U        C   U   gaag 
  CCAGUGU CAGACUAC UGU Cag    u
  ||||||| |||||||| ||| |||     
  GGUUACA GUCUGAUG ACA guu    a
UU       C        -   u   ggug 

Annotation confidence High

Genome context

CM001450.1: 27355403-27355462 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-199a-3

Mature oni-miR-199a-5p

• Accession: MIMAT0059298
• Description: Oreochromis niloticus oni-miR-199a-5p mature miRNA
• Sequence: 1 - CCCAGUGUUCAGACUACCUGUUC - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-199a-3p

• Accession: MIMAT0042650
• Description: Oreochromis niloticus oni-miR-199a-3p mature miRNA
• Sequence: 40 - ACAGUAGUCUGCACAUUGGUU - 60
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774