Stem-loop oni-mir-27b

Accession

MI0034546

Description

Oreochromis niloticus oni-mir-27b precursor miRNA

Literature search

2 open access papers mention oni-mir-27b
(2 sentences)

Sequence

7672331 reads, 9008.0 reads per million, 113 experiments

AGAGCUUAGCUGAUUGGUGAACagugauugauucccucuuugUUCACAGUGGCUAAGUUCUGC
(((((((((((.((((.(((((((.((.........)).))))))))))))))))))))))..

Structure

--           G    G       u  uug 
  AGAGCUUAGCU AUUG UGAACag ga   a
  ||||||||||| |||| ||||||| ||   u
  UCUUGAAUCGG UGAC ACUUguu cu   u
CG           -    -       u  ccc 

Annotation confidence High

Genome context

CM001455.1: 20336373-20336435 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from oni-mir-27b

Mature oni-miR-27b-5p

• Accession: MIMAT0059308
• Description: Oreochromis niloticus oni-miR-27b-5p mature miRNA
• Sequence: 1 - AGAGCUUAGCUGAUUGGUGAAC - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-27b-3p

• Accession: MIMAT0042657
• Description: Oreochromis niloticus oni-miR-27b-3p mature miRNA
• Sequence: 43 - UUCACAGUGGCUAAGUUCUGC - 63
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774