Stem-loop oni-mir-140

Accession

MI0034557

Description

Oreochromis niloticus oni-mir-140 precursor miRNA

Sequence

2461145 reads, 2687.0 reads per million, 112 experiments

CAGUGGUUUUACCCUAUGGUAGgugacaucaugcuguucuACCACAGGGUAGAACCACGGAC
..(((((((((((((.((((((..((((......)))))))))).)))))))))))))....

Structure

--CA             A      gu    uc 
    GUGGUUUUACCCU UGGUAG  gaca  a
    ||||||||||||| ||||||  ||||   
    CACCAAGAUGGGA ACCAuc  uugu  u
CAGG             C      --    cg 

Annotation confidence High

Genome context

CM001450.1: 4527097-4527158 [+]

Mature oni-miR-140-5p

• Accession: MIMAT0059315
• Description: Oreochromis niloticus oni-miR-140-5p mature miRNA
• Sequence: 1 - CAGUGGUUUUACCCUAUGGUAG - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-140-3p

• Accession: MIMAT0042660
• Description: Oreochromis niloticus oni-miR-140-3p mature miRNA
• Sequence: 41 - ACCACAGGGUAGAACCACGGAC - 62
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774