Stem-loop oni-mir-462

Accession

MI0034560

Description

Oreochromis niloticus oni-mir-462 precursor miRNA

Literature search

4 open access papers mention oni-mir-462
(11 sentences)

Sequence

3948199 reads, 4348.0 reads per million, 105 experiments

UAACGGAACCCAUAAUGCAGCUGugauucugagccccagCUGGUUAUGGGGUCCGUUUCCA
.((((((.((((((((.((((((.(..........))))))))))))))).))))))....

Structure

---U      A        G      u auuc 
    AACGGA CCCAUAAU CAGCUG g    u
    |||||| |||||||| |||||| |     
    UUGCCU GGGUAUUG GUCgac c    g
ACCU      G        -      - ccga 

Annotation confidence Medium

Genome context

CM001463.1: 31139411-31139471 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-462

Mature oni-miR-462-5p

• Accession: MIMAT0042662
• Description: Oreochromis niloticus oni-miR-462-5p mature miRNA
• Sequence: 1 - UAACGGAACCCAUAAUGCAGCUG - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-462-3p

• Accession: MIMAT0059317
• Description: Oreochromis niloticus oni-miR-462-3p mature miRNA
• Sequence: 40 - CUGGUUAUGGGGUCCGUUUCCA - 61
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774