Stem-loop oni-mir-184b

Accession

MI0034564

Description

Oreochromis niloticus oni-mir-184b precursor miRNA

Sequence

874401 reads, 1451.0 reads per million, 112 experiments

UUAUCACUUUUCCAGCCCAGCUaucuauuaaauguuuguUGGACGGAGAACUGAUAAGGG
((((((.((((((.(.(((((...(........)...))))).))))))).))))))...

Structure

---      C      A C     Uau uau 
   UUAUCA UUUUCC G CCAGC   c   u
   |||||| |||||| | |||||   |    
   AAUAGU AAGAGG C GGUug   g   a
GGG      C      - A     uuu uaa 

Annotation confidence High

Genome context

CM001450.1: 39659041-39659100 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-184b

Mature oni-miR-184b-5p

• Accession: MIMAT0059320
• Description: Oreochromis niloticus oni-miR-184b-5p mature miRNA
• Sequence: 1 - UUAUCACUUUUCCAGCCCAGCU - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-184b-3p

• Accession: MIMAT0042665
• Description: Oreochromis niloticus oni-miR-184b-3p mature miRNA
• Sequence: 40 - UGGACGGAGAACUGAUAAGGG - 60
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774