Stem-loop oni-mir-22a

Accession

MI0034565

Description

Oreochromis niloticus oni-mir-22a precursor miRNA

Literature search

2 open access papers mention oni-mir-22a
(7 sentences)

Sequence

44134795 reads, 45689.0 reads per million, 116 experiments

AGUUCUUCACUGGCAAGCUUUauguccucauguaccagcuaAAGCUGCCAGCUGAAGAACUGU
(((((((((((((((.((((((.((............)))))))))))))).)))))))))..

Structure

--         -      A      u  ccuca 
  AGUUCUUCA CUGGCA GCUUUa gu     u
  ||||||||| |||||| |||||| ||      
  UCAAGAAGU GACCGU CGAAau cg     g
UG         C      -      -  accau 

Annotation confidence High

Genome context

CM001457.1: 14345307-14345369 [+]

Mature oni-miR-22a-5p

• Accession: MIMAT0059321
• Description: Oreochromis niloticus oni-miR-22a-5p mature miRNA
• Sequence: 1 - AGUUCUUCACUGGCAAGCUUU - 21
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-22a-3p

• Accession: MIMAT0042666
• Description: Oreochromis niloticus oni-miR-22a-3p mature miRNA
• Sequence: 42 - AAGCUGCCAGCUGAAGAACUGU - 63
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774