Stem-loop oni-mir-2188

Accession

MI0034566

Description

Oreochromis niloticus oni-mir-2188 precursor miRNA

Sequence

3735775 reads, 3690.0 reads per million, 105 experiments

AAGGUCCAACCUCACAUGUCCUgugcggcugaaggaagGCUGUGUGAGGUCAGACCUAUC
.(((((..((((((((((.(((.(.(.......).)))).))))))))))..)))))...

Structure

--A     CA          U   g g gg 
   AGGUC  ACCUCACAUG CCU u c  c
   |||||  |||||||||| ||| | |  u
   UCCAG  UGGAGUGUGU Gga a g  g
CUA     AC          C   - g aa 

Annotation confidence High

Genome context

CM001455.1: 16421240-16421299 [-]

Mature oni-miR-2188-5p

• Accession: MIMAT0042667
• Description: Oreochromis niloticus oni-miR-2188-5p mature miRNA
• Sequence: 1 - AAGGUCCAACCUCACAUGUCCU - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-2188-3p

• Accession: MIMAT0059322
• Description: Oreochromis niloticus oni-miR-2188-3p mature miRNA
• Sequence: 39 - GCUGUGUGAGGUCAGACCUAUC - 60
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774