Stem-loop oni-mir-25

Accession

MI0034568

Description

Oreochromis niloticus oni-mir-25 precursor miRNA

Literature search

2 open access papers mention oni-mir-25
(4 sentences)

Sequence

2490091 reads, 3211.0 reads per million, 116 experiments

AGGCGGAGACUUGGGCAAUUGCCgggcaucccagagggCAUUGCACUUGUCUCGGUCUGA
((((.(((((..(.(((((.((((((...)))....)))))))).)..))))).))))..

Structure

--    G     UU G     U   ----   c 
  AGGC GAGAC  G GCAAU GCC    ggg  
  |||| |||||  | ||||| |||    ||| a
  UCUG CUCUG  C CGUUA Cgg    ccc  
AG    G     UU A     -   gaga   u 

Annotation confidence High

Genome context

CM001445.1: 9821767-9821826 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from oni-mir-25

Mature oni-miR-25-5p

• Accession: MIMAT0059325
• Description: Oreochromis niloticus oni-miR-25-5p mature miRNA
• Sequence: 1 - AGGCGGAGACUUGGGCAAUUGCC - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-25-3p

• Accession: MIMAT0042669
• Description: Oreochromis niloticus oni-miR-25-3p mature miRNA
• Sequence: 39 - CAUUGCACUUGUCUCGGUCUGA - 60
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774