Stem-loop oni-mir-126

Accession

MI0034574

Description

Oreochromis niloticus oni-mir-126 precursor miRNA

Literature search

1 open access papers mention oni-mir-126
(1 sentences)

Sequence

17710242 reads, 22900.0 reads per million, 116 experiments

CAUUAUUACUUUUGGUACGCGcuaugccacucucaacUCGUACCGUGAGUAAUAAUGCA
(((((((((((.(((((((.(...............).))))))).)))))))))))..

Structure

--           U       C cuaugc 
  CAUUAUUACUU UGGUACG G      c
  ||||||||||| ||||||| |      a
  GUAAUAAUGAG GCCAUGC c      c
AC           U       U aacucu 

Annotation confidence High

Genome context

CM001450.1: 13313416-13313474 [+]

Mature oni-miR-126-5p

• Accession: MIMAT0042673
• Description: Oreochromis niloticus oni-miR-126-5p mature miRNA
• Sequence: 1 - CAUUAUUACUUUUGGUACGCG - 21
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-126-3p

• Accession: MIMAT0059333
• Description: Oreochromis niloticus oni-miR-126-3p mature miRNA
• Sequence: 38 - UCGUACCGUGAGUAAUAAUGCA - 59
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774