Stem-loop oni-mir-30b

Accession

MI0034575

Description

Oreochromis niloticus oni-mir-30b precursor miRNA

Literature search

3 open access papers mention oni-mir-30b
(6 sentences)

Sequence

4972152 reads, 6042.0 reads per million, 109 experiments

UGUAAACAUCCUACACUCUCAGCUguguugucauggagCUGGGAGAGGGGUGUUUACGCU
.(((((((((((...(((((((((.(((....))).))))))))).)))))))))))...

Structure

--U           ACA         g   u 
   GUAAACAUCCU   CUCUCAGCU ugu g
   |||||||||||   ||||||||| |||  
   CAUUUGUGGGG   GAGGGUCga gua u
UCG           --A         g   c 

Annotation confidence High

Genome context

CM001464.1: 13444315-13444374 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-30b

Mature oni-miR-30b-5p

• Accession: MIMAT0042674
• Description: Oreochromis niloticus oni-miR-30b-5p mature miRNA
• Sequence: 1 - UGUAAACAUCCUACACUCUCAGCU - 24
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-30b-3p

• Accession: MIMAT0059334
• Description: Oreochromis niloticus oni-miR-30b-3p mature miRNA
• Sequence: 39 - CUGGGAGAGGGGUGUUUACGCU - 60
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774