Stem-loop oni-mir-125a-1

Accession

MI0034577

Description

Oreochromis niloticus oni-mir-125a-1 precursor miRNA

Sequence

9044136 reads, 7206.0 reads per million, 113 experiments

UCCCUGAGACCCUUAACCUGUGaugauaugaaaggucaCAGGUGAGGUCCUUGGGAAC
((((.(((..(((((.((((((((..........)))))))))))))..)))))))..

Structure

--    U   AC     A        gaua 
  UCCC GAG  CCUUA CCUGUGau    u
  |||| |||  ||||| ||||||||     
  AGGG UUC  GGAGU GGACacug    g
CA    -   CU     -        gaaa 

Annotation confidence High

Genome context

CM001464.1: 9145640-9145697 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-125a-1

Mature oni-miR-125a-5p

• Accession: MIMAT0042676
• Description: Oreochromis niloticus oni-miR-125a-5p mature miRNA
• Sequence: 1 - UCCCUGAGACCCUUAACCUGUG - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-125a-1-3p

• Accession: MIMAT0059337
• Description: Oreochromis niloticus oni-miR-125a-1-3p mature miRNA
• Sequence: 39 - CAGGUGAGGUCCUUGGGAAC - 58
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774