Stem-loop oni-mir-144a

Accession

MI0034581

Description

Oreochromis niloticus oni-mir-144a precursor miRNA

Literature search

1 open access papers mention oni-mir-144a
(7 sentences)

Sequence

2040700 reads, 2509.0 reads per million, 105 experiments

GGAUAUCAUCUUAUACUGUAAGUuuauuaaagagacaCUACAGUAUAGAUGAUGUACU
..(((((((((.((((((((.((((.......))))..)))))))))))))))))...

Structure

-GG         U        -A    au 
   AUAUCAUCU AUACUGUA  GUuu  u
   ||||||||| ||||||||  ||||  a
   UGUAGUAGA UAUGACAU  caga  a
UCA         -        Ca    ga 

Annotation confidence High

Genome context

GL831331.1: 655264-655321 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from oni-mir-144a

Mature oni-miR-144a-5p

• Accession: MIMAT0042678
• Description: Oreochromis niloticus oni-miR-144a-5p mature miRNA
• Sequence: 1 - GGAUAUCAUCUUAUACUGUAAGU - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-144a-3p

• Accession: MIMAT0059341
• Description: Oreochromis niloticus oni-miR-144a-3p mature miRNA
• Sequence: 38 - CUACAGUAUAGAUGAUGUACU - 58
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774