Stem-loop oni-mir-22b

Accession

MI0034587

Description

Oreochromis niloticus oni-mir-22b precursor miRNA

Literature search

1 open access papers mention oni-mir-22b
(1 sentences)

Sequence

19527176 reads, 19497.0 reads per million, 116 experiments

AGUUCUUCACUGGCAAGCUUUauguuucuguacacaugcuaAAGCUGCCAGCUGAAGAACUG
(((((((((((((((.((((((.((............)))))))))))))).))))))))).

Structure

-         -      A      u  uucug 
 AGUUCUUCA CUGGCA GCUUUa gu     u
 ||||||||| |||||| |||||| ||      
 UCAAGAAGU GACCGU CGAAau cg     a
G         C      -      -  uacac 

Annotation confidence High

Genome context

GL831184.1: 3403945-3404006 [-]

Mature oni-miR-22b-5p

• Accession: MIMAT0059345
• Description: Oreochromis niloticus oni-miR-22b-5p mature miRNA
• Sequence: 1 - AGUUCUUCACUGGCAAGCUUU - 21
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-22b-3p

• Accession: MIMAT0042681
• Description: Oreochromis niloticus oni-miR-22b-3p mature miRNA
• Sequence: 42 - AAGCUGCCAGCUGAAGAACUG - 62
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774