Stem-loop oni-let-7i-1

Accession

MI0034588

Description

Oreochromis niloticus oni-let-7i-1 precursor miRNA

Literature search

4 open access papers mention oni-let-7i-1
(18 sentences)

Sequence

13649279 reads, 11060.0 reads per million, 108 experiments

UGAGGUAGUAGUUUGUGCUGUUgguuggguugagacacugcccgcuauggagaugaCUGCGCAAGCUACUGCCUUGCU
.(((((((((((((((((.((((((.((((.........)))))))........))).)))))))))))))))))...

Structure

--U                 U   --------   u    uga 
   GAGGUAGUAGUUUGUGC GUU        ggu gggu   g
   ||||||||||||||||| |||        ||| ||||   a
   UUCCGUCAUCGAACGCG Cag        ucg cccg   c
UCG                 U   uagaggua   -    uca 

Annotation confidence High

Genome context

CM001456.1: 32052030-32052107 [+]

Mature oni-let-7i-5p

• Accession: MIMAT0042682
• Description: Oreochromis niloticus oni-let-7i-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGUUUGUGCUGUU - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-let-7i-1-3p

• Accession: MIMAT0059346
• Description: Oreochromis niloticus oni-let-7i-1-3p mature miRNA
• Sequence: 57 - CUGCGCAAGCUACUGCCUUGCU - 78
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774