Stem-loop oni-let-7i-2

Accession

MI0034589

Description

Oreochromis niloticus oni-let-7i-2 precursor miRNA

Literature search

4 open access papers mention oni-let-7i-2
(18 sentences)

Sequence

13594647 reads, 11013.0 reads per million, 108 experiments

UGAGGUAGUAGUUUGUGCUGUUggucggguugucauauuaccccuuguggagaugaCUGCGCAAUCUACUGCCUUGCc
.((((((((((.((((((....(((((.....(((((........)))))...))))))))))).))))))))))...

Structure

--U          U      UGUU     gguug     uua 
   GAGGUAGUAG UUGUGC    ggucg     ucaua   c
   |||||||||| ||||||    |||||     |||||    
   UUCCGUCAUC AACGCG    UCagu     ggugu   c
cCG          U      ----     --aga     ucc 

Annotation confidence High

Genome context

CM001460.1: 27169217-27169294 [+]

Mature oni-let-7i-5p

• Accession: MIMAT0042682
• Description: Oreochromis niloticus oni-let-7i-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGUUUGUGCUGUU - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-let-7i-2-3p

• Accession: MIMAT0059347
• Description: Oreochromis niloticus oni-let-7i-2-3p mature miRNA
• Sequence: 57 - CUGCGCAAUCUACUGCCUUGC - 77
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774