Stem-loop oni-mir-19b-1

Accession

MI0034592

Description

Oreochromis niloticus oni-mir-19b-1 precursor miRNA

Literature search

1 open access papers mention oni-mir-19b-1
(2 sentences)

Sequence

3653887 reads, 3400.0 reads per million, 107 experiments

AGUUUUGCUGGUUUGCAUUCAGCUuuaacggguguuugcUGUGCAAAUCCAUGCAAAACUG
(((((((((((((((((..((((...(((....))).)))))))))).))).)))))))).

Structure

-        -   -      UU    Uuu   g 
 AGUUUUGC UGG UUUGCA  CAGC   aac g
 |||||||| ||| ||||||  ||||   |||  
 UCAAAACG ACC AAACGU  GUcg   uug g
G        U   U      --    --u   u 

Annotation confidence High

Genome context

CM001444.1: 7385620-7385680 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from oni-mir-19b-1

Mature oni-miR-19b-1-5p

• Accession: MIMAT0059350
• Description: Oreochromis niloticus oni-miR-19b-1-5p mature miRNA
• Sequence: 1 - AGUUUUGCUGGUUUGCAUUCAGCU - 24
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-19b-3p

• Accession: MIMAT0042684
• Description: Oreochromis niloticus oni-miR-19b-3p mature miRNA
• Sequence: 40 - UGUGCAAAUCCAUGCAAAACUG - 61
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774