Stem-loop oni-mir-16a

Accession

MI0034596

Description

Oreochromis niloticus oni-mir-16a precursor miRNA

Literature search

1 open access papers mention oni-mir-16a
(2 sentences)

Sequence

3793684 reads, 3057.0 reads per million, 107 experiments

UAGCAGCACGUAAAUAUUGGCGugugagaauagaccccaacCCCAAUAUUAGCAGUGCUGCUU
.((((((((((.((((((((.((.((.(........))))).)))))))).)).)))))))).

Structure

U        -  A        C  g  a aau 
 AGCAGCAC GU AAUAUUGG Gu ug g   a
 |||||||| || |||||||| || || |    
 UCGUCGUG CG UUAUAACC ca ac c   g
U        A  A        C  -  - cca 

Annotation confidence High

Genome context

CM001457.1: 18537052-18537114 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-16a

Mature oni-miR-16a-5p

• Accession: MIMAT0042687
• Description: Oreochromis niloticus oni-miR-16a-5p mature miRNA
• Sequence: 1 - UAGCAGCACGUAAAUAUUGGCG - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-16a-3p

• Accession: MIMAT0059354
• Description: Oreochromis niloticus oni-miR-16a-3p mature miRNA
• Sequence: 42 - CCCAAUAUUAGCAGUGCUGCUU - 63
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774