Stem-loop oni-mir-190b

Accession

MI0034597

Description

Oreochromis niloticus oni-mir-190b precursor miRNA

Sequence

83084 reads, 252.0 reads per million, 80 experiments

UGAUAUGUUUGAUAUUCGGUUGuucuugugcuuuauaaugucaACUAAAUAUCAGACAUAUUCCU
.(((((((((((((((.(((((...(((((...)))))...))))).)))))))))))))))...

Structure

--U               C     uuc     c 
   GAUAUGUUUGAUAUU GGUUG   uugug  
   ||||||||||||||| |||||   ||||| u
   UUAUACAGACUAUAA UCAac   aauau  
UCC               A     ugu     u 

Annotation confidence High

Genome context

CM001454.1: 16907488-16907552 [+]

Mature oni-miR-190b-5p

• Accession: MIMAT0042688
• Description: Oreochromis niloticus oni-miR-190b-5p mature miRNA
• Sequence: 1 - UGAUAUGUUUGAUAUUCGGUUG - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-190b-3p

• Accession: MIMAT0059355
• Description: Oreochromis niloticus oni-miR-190b-3p mature miRNA
• Sequence: 44 - ACUAAAUAUCAGACAUAUUCCU - 65
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774