Stem-loop oni-mir-135a

Accession

MI0034599

Description

Oreochromis niloticus oni-mir-135a precursor miRNA

Sequence

565202 reads, 702.0 reads per million, 105 experiments

UAUGGCUUUUUAUUCCUAUCUGacuguacuuaugguucaUAUAGGGAUGGAAGCCAUGCA
((((((((((.((((((((.(((((((....)))).))).))))))))))))))))))..

Structure

--          U        C   -    a 
  UAUGGCUUUU AUUCCUAU UGa cugu c
  |||||||||| |||||||| ||| ||||  
  GUACCGAAGG UAGGGAUA acu ggua u
AC          -        U   u    u 

Annotation confidence High

Genome context

CM001463.1: 31197392-31197451 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from oni-mir-135a

Mature oni-miR-135a-5p

• Accession: MIMAT0042690
• Description: Oreochromis niloticus oni-miR-135a-5p mature miRNA
• Sequence: 1 - UAUGGCUUUUUAUUCCUAUCUG - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-135a-3p

• Accession: MIMAT0059357
• Description: Oreochromis niloticus oni-miR-135a-3p mature miRNA
• Sequence: 40 - UAUAGGGAUGGAAGCCAUGCA - 60
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774