Stem-loop oni-mir-133b

Accession

MI0034602

Description

Oreochromis niloticus oni-mir-133b precursor miRNA

Literature search

1 open access papers mention oni-mir-133b
(3 sentences)

Sequence

25099003 reads, 15939.0 reads per million, 116 experiments

GCUGGUCAAACGGAACCAAGUCagguguuucugugaggUUUGGUCCCCUUCAACCAGCU
((((((..((.((.(((((((((.(......).)))..)))))).)).))..)))))).

Structure

-      CA  C  A      --   g ug 
 GCUGGU  AA GG ACCAAG  UCa g  u
 ||||||  || || ||||||  ||| |   
 CGACCA  UU CC UGGUUU  agu u  u
U      AC  C  C      gg   g cu 

Annotation confidence High

Genome context

CM001458.1: 17341195-17341253 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-133b

Mature oni-miR-133b-5p

• Accession: MIMAT0059360
• Description: Oreochromis niloticus oni-miR-133b-5p mature miRNA
• Sequence: 1 - GCUGGUCAAACGGAACCAAGUC - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-133b-3p

• Accession: MIMAT0042693
• Description: Oreochromis niloticus oni-miR-133b-3p mature miRNA
• Sequence: 39 - UUUGGUCCCCUUCAACCAGCU - 59
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774