Stem-loop oni-mir-92b

Accession

MI0034603

Description

Oreochromis niloticus oni-mir-92b precursor miRNA

Literature search

2 open access papers mention oni-mir-92b
(7 sentences)

Sequence

1134045 reads, 773.0 reads per million, 111 experiments

AGGUCCGGGAUGUGGUGCACUGUUguaauaucuccccuccaaUAUUGCACUCGUCCCGGCCUCC
(((.((((((((.((((((.(((((..............))))).)))))))))))))))))..

Structure

--   U        U      C     uaauau 
  AGG CCGGGAUG GGUGCA UGUUg      c
  ||| |||||||| |||||| |||||       
  UCC GGCCCUGC UCACGU AUaac      u
CC   -        -      U     cucccc 

Annotation confidence High

Genome context

CM001454.1: 30204982-30205045 [-]

Mature oni-miR-92b-5p

• Accession: MIMAT0059361
• Description: Oreochromis niloticus oni-miR-92b-5p mature miRNA
• Sequence: 1 - AGGUCCGGGAUGUGGUGCACUGUU - 24
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-92b-3p

• Accession: MIMAT0042694
• Description: Oreochromis niloticus oni-miR-92b-3p mature miRNA
• Sequence: 43 - UAUUGCACUCGUCCCGGCCUCC - 64
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774