Stem-loop oni-mir-99b

Accession

MI0034604

Description

Oreochromis niloticus oni-mir-99b precursor miRNA

Literature search

1 open access papers mention oni-mir-99b
(4 sentences)

Sequence

14443024 reads, 15304.0 reads per million, 107 experiments

AACCCGUAGAUCCGAUCUUGUGgcaaaucugacagcaCAAGCUCGCCUCUGUGGGUCU
.(((((((((..(((.((((((.............)))))).)))..)))))))))..

Structure

-A         UC   U      gcaaa 
  ACCCGUAGA  CGA CUUGUG     u
  |||||||||  ||| ||||||     c
  UGGGUGUCU  GCU GAACac     u
UC         CC   C      gacag 

Annotation confidence High

Genome context

CM001453.1: 2453767-2453824 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from oni-mir-99b

Mature oni-miR-99b-5p

• Accession: MIMAT0042695
• Description: Oreochromis niloticus oni-miR-99b-5p mature miRNA
• Sequence: 1 - AACCCGUAGAUCCGAUCUUGUG - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-99b-3p

• Accession: MIMAT0059362
• Description: Oreochromis niloticus oni-miR-99b-3p mature miRNA
• Sequence: 38 - CAAGCUCGCCUCUGUGGGUCU - 58
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774