Stem-loop oni-mir-194a

Accession

MI0034609

Description

Oreochromis niloticus oni-mir-194a precursor miRNA

Literature search

2 open access papers mention oni-mir-194a
(11 sentences)

Sequence

1912379 reads, 2686.0 reads per million, 103 experiments

UGUAACAGCAACUCCAUGUGGAagcugugucuguuCCAGUGGAGGUGCUGUUACUUG
.(((((((((.((((((.(((((..........))))))))))).)))))))))...

Structure

--U         A      G     gcug 
   GUAACAGCA CUCCAU UGGAa    u
   ||||||||| |||||| |||||     
   CAUUGUCGU GAGGUG ACCuu    g
GUU         G      -     gucu 

Annotation confidence High

Genome context

CM001453.1: 6970620-6970676 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-194a

Mature oni-miR-194a-5p

• Accession: MIMAT0042700
• Description: Oreochromis niloticus oni-miR-194a-5p mature miRNA
• Sequence: 1 - UGUAACAGCAACUCCAUGUGGA - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-194a-3p

• Accession: MIMAT0059368
• Description: Oreochromis niloticus oni-miR-194a-3p mature miRNA
• Sequence: 36 - CCAGUGGAGGUGCUGUUACUUG - 57
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774