Stem-loop oni-mir-200b

Accession

MI0034619

Description

Oreochromis niloticus oni-mir-200b precursor miRNA

Literature search

2 open access papers mention oni-mir-200b
(4 sentences)

Sequence

2989552 reads, 3326.0 reads per million, 106 experiments

CAUCUUACGAGGCAGCAUUGGAUaucaucacuuucucUAAUACUGCCUGGUAAUGAUGAU
((((((((.((((((.((((((.............)))))).)))))).)))).))))..

Structure

--    -    G      C      Uauca 
  CAUC UUAC AGGCAG AUUGGA     u
  |||| |||| |||||| ||||||     c
  GUAG AAUG UCCGUC UAAUcu     a
UA    U    G      A      cuuuc 

Annotation confidence High

Genome context

GL831308.1: 159836-159895 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from oni-mir-200b

Mature oni-miR-200b-5p

• Accession: MIMAT0059377
• Description: Oreochromis niloticus oni-miR-200b-5p mature miRNA
• Sequence: 1 - CAUCUUACGAGGCAGCAUUGGAU - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-200b-3p

• Accession: MIMAT0042706
• Description: Oreochromis niloticus oni-miR-200b-3p mature miRNA
• Sequence: 38 - UAAUACUGCCUGGUAAUGAUGAU - 60
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774