Stem-loop oni-mir-30d

Accession

MI0034620

Description

Oreochromis niloticus oni-mir-30d precursor miRNA

Literature search

5 open access papers mention oni-mir-30d
(9 sentences)

Sequence

2002145 reads, 2236.0 reads per million, 110 experiments

UGUAAACAUCCUACACUCAGCUguuauugauugccacagaggCUGAGAGGAGGUUGUUUACUUG
.(((((((.(((...(((((((.....((.....))....)))))))...))).)))))))...

Structure

--U       U   ACA       guuau  a 
   GUAAACA CCU   CUCAGCU     ug u
   ||||||| |||   |||||||     || u
   CAUUUGU GGA   GAGUCgg     ac g
GUU       U   GGA       -agac  c 

Annotation confidence High

Genome context

CM001464.1: 17932720-17932783 [+]

Mature oni-miR-30d-5p

• Accession: MIMAT0042707
• Description: Oreochromis niloticus oni-miR-30d-5p mature miRNA
• Sequence: 1 - UGUAAACAUCCUACACUCAGCU - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-30d-3p

• Accession: MIMAT0059378
• Description: Oreochromis niloticus oni-miR-30d-3p mature miRNA
• Sequence: 43 - CUGAGAGGAGGUUGUUUACUUG - 64
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774