Stem-loop oni-mir-27e-2

Accession

MI0034622

Description

Oreochromis niloticus oni-mir-27e-2 precursor miRNA

Literature search

1 open access papers mention oni-mir-27e-2
(1 sentences)

Sequence

5741089 reads, 4345.0 reads per million, 116 experiments

cAGAACUUAGCUCAUUAGUGAGCauuacacaaaaaaggaaauugUUCACAGUGGCUAAGUUCAGU
..(((((((((.((((.(((((((.....(......).....))))))))))))))))))))...

Structure

-cA         U    A       uuaca aa 
   GAACUUAGC CAUU GUGAGCa     c  a
   ||||||||| |||| |||||||     |   
   CUUGAAUCG GUGA CACUUgu     g  a
UGA         -    -       uaaag aa 

Annotation confidence High

Genome context

CM001461.1: 17732542-17732606 [-]

Mature oni-miR-27e-2-5p

• Accession: MIMAT0059380
• Description: Oreochromis niloticus oni-miR-27e-2-5p mature miRNA
• Sequence: 2 - AGAACUUAGCUCAUUAGUGAGC - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-27e-3p

• Accession: MIMAT0042709
• Description: Oreochromis niloticus oni-miR-27e-3p mature miRNA
• Sequence: 45 - UUCACAGUGGCUAAGUUCAGU - 65
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774