Stem-loop oni-mir-27a

Accession

MI0034624

Description

Oreochromis niloticus oni-mir-27a precursor miRNA

Literature search

1 open access papers mention oni-mir-27a
(1 sentences)

Sequence

3042403 reads, 2726.0 reads per million, 115 experiments

AGGACUUAGCUCGCUCCGUGAACaguucagugaaauccugugUUCACAGUGGCUAAGUUCCGC
.(((((((((.((((..(((((((...(((.(....))))))))))))))))))))))))...

Structure

--A         U    CC       guu   u a 
   GGACUUAGC CGCU  GUGAACa   cag g a
   ||||||||| ||||  |||||||   ||| |  
   CUUGAAUCG GUGA  CACUUgu   guc c a
CGC         -    --       ---   - u 

Annotation confidence High

Genome context

CM001461.1: 14982424-14982486 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from oni-mir-27a

Mature oni-miR-27a-5p

• Accession: MIMAT0059382
• Description: Oreochromis niloticus oni-miR-27a-5p mature miRNA
• Sequence: 1 - AGGACUUAGCUCGCUCCGUGAAC - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-27a-3p

• Accession: MIMAT0042710
• Description: Oreochromis niloticus oni-miR-27a-3p mature miRNA
• Sequence: 43 - UUCACAGUGGCUAAGUUCCGC - 63
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774