Stem-loop oni-mir-23b

Accession

MI0034627

Description

Oreochromis niloticus oni-mir-23b precursor miRNA

Literature search

1 open access papers mention oni-mir-23b
(3 sentences)

Sequence

4397052 reads, 2912.0 reads per million, 116 experiments

GGGUUCCUGGCGUGCUGAUUUgugacuuaugauaaaAUCACAUUGCCAGGGAUUACC
.(((((((((((((.((((((.............)))))))).)))))))))))...

Structure

--G           -  C      gugac 
   GGUUCCUGGCG UG UGAUUU     u
   ||||||||||| || ||||||     u
   UUAGGGACCGU AC ACUAaa     a
CCA           U  -      auagu 

Annotation confidence High

Genome context

CM001455.1: 20336033-20336089 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from oni-mir-23b

Mature oni-miR-23b-5p

• Accession: MIMAT0059385
• Description: Oreochromis niloticus oni-miR-23b-5p mature miRNA
• Sequence: 1 - GGGUUCCUGGCGUGCUGAUUU - 21
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-23b-3p

• Accession: MIMAT0042713
• Description: Oreochromis niloticus oni-miR-23b-3p mature miRNA
• Sequence: 37 - AUCACAUUGCCAGGGAUUACC - 57
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774