Stem-loop oni-mir-216b

Accession

MI0034631

Description

Oreochromis niloticus oni-mir-216b precursor miRNA

Literature search

1 open access papers mention oni-mir-216b
(3 sentences)

Sequence

1635643 reads, 1778.0 reads per million, 105 experiments

UAAUCUCUGCAGGCAACUGUGAuggugcuuuauuuucucACAAUCACCUGGAGAGAUUCUG
.(((((((.((((....(((((.((..........)))))))....)))).)))))))...

Structure

--U       G    CAAC     u  ugcu 
   AAUCUCU CAGG    UGUGA gg    u
   ||||||| ||||    ||||| ||     
   UUAGAGA GUCC    ACAcu cu    u
GUC       G    ACUA     -  uuua 

Annotation confidence High

Genome context

CM001456.1: 20186340-20186400 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from oni-mir-216b

Mature oni-miR-216b-5p

• Accession: MIMAT0042716
• Description: Oreochromis niloticus oni-miR-216b-5p mature miRNA
• Sequence: 1 - UAAUCUCUGCAGGCAACUGUGA - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-216b-3p

• Accession: MIMAT0059390
• Description: Oreochromis niloticus oni-miR-216b-3p mature miRNA
• Sequence: 40 - ACAAUCACCUGGAGAGAUUCUG - 61
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774