Stem-loop oni-mir-460

Accession

MI0034632

Description

Oreochromis niloticus oni-mir-460 precursor miRNA

Literature search

1 open access papers mention oni-mir-460
(2 sentences)

Sequence

130688 reads, 112.0 reads per million, 104 experiments

CCUGCAUUGUACACACUGUGCGuauaaaugucauaagCACAGCGCAUACAAUGUGGAUG
.((((((((((..(.((((((.(((.......))).)))))).)..))))))))))...

Structure

--C          CA A      G   aa 
   CUGCAUUGUA  C CUGUGC uau  a
   ||||||||||  | |||||| |||  u
   GGUGUAACAU  G GACACg aua  g
GUA          AC C      a   cu 

Annotation confidence High

Genome context

CM001461.1: 14143293-14143351 [-]

Mature oni-miR-460-5p

• Accession: MIMAT0059391
• Description: Oreochromis niloticus oni-miR-460-5p mature miRNA
• Sequence: 1 - CCUGCAUUGUACACACUGUGCG - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-460-3p

• Accession: MIMAT0042717
• Description: Oreochromis niloticus oni-miR-460-3p mature miRNA
• Sequence: 38 - CACAGCGCAUACAAUGUGGAUG - 59
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774