Stem-loop oni-mir-217

Accession

MI0034633

Description

Oreochromis niloticus oni-mir-217 precursor miRNA

Literature search

1 open access papers mention oni-mir-217
(3 sentences)

Sequence

5221494 reads, 6703.0 reads per million, 105 experiments

UACUGCAUCAGGAACUGAUUGGCuaaugcucaauugcCAACAGUACCUGAUGCAUUGCC
...(((((((((.((((.(((((.(((.....)))))))))))).))))))))).....

Structure

--UAC         A    A     u   g 
     UGCAUCAGG ACUG UUGGC aau c
     ||||||||| |||| ||||| ||| u
     ACGUAGUCC UGAC AACcg uua c
CCGUU         A    -     -   a 

Annotation confidence High

Genome context

CM001456.1: 20187605-20187663 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from oni-mir-217

Mature oni-miR-217-5p

• Accession: MIMAT0042718
• Description: Oreochromis niloticus oni-miR-217-5p mature miRNA
• Sequence: 1 - UACUGCAUCAGGAACUGAUUGGC - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-217-3p

• Accession: MIMAT0059392
• Description: Oreochromis niloticus oni-miR-217-3p mature miRNA
• Sequence: 38 - CAACAGUACCUGAUGCAUUGCC - 59
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774