Stem-loop oni-mir-20-1

Accession

MI0034634

Description

Oreochromis niloticus oni-mir-20-1 precursor miRNA

Sequence

1863879 reads, 1707.0 reads per million, 116 experiments

UAAAGUGCUUAUAGUGCAGGUAGuguuuugcacaaucuACUGCAAUGUAAGCACUUGAAGU
..(((((((((((.(((((...((((...))))......))))).))))))))))).....

Structure

---UA           G     ---GUA    u 
     AAGUGCUUAUA UGCAG      Gugu  
     ||||||||||| |||||      |||| u
     UUCACGAAUGU ACGUC      cacg  
UGAAG           A     Aucuaa    u 

Annotation confidence High

Genome context

CM001444.1: 7385496-7385556 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from oni-mir-20-1

Mature oni-miR-20-5p

• Accession: MIMAT0042719
• Description: Oreochromis niloticus oni-miR-20-5p mature miRNA
• Sequence: 1 - UAAAGUGCUUAUAGUGCAGGUAG - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-20-1-3p

• Accession: MIMAT0059393
• Description: Oreochromis niloticus oni-miR-20-1-3p mature miRNA
• Sequence: 39 - ACUGCAAUGUAAGCACUUGAAGU - 61
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774