Stem-loop oni-mir-101a

Accession

MI0034635

Description

Oreochromis niloticus oni-mir-101a precursor miRNA

Literature search

1 open access papers mention oni-mir-101a
(1 sentences)

Sequence

13313881 reads, 14985.0 reads per million, 108 experiments

UCAGUUAUCACAGUGCUGAUGCUguccccaucgaaggUACAGUACUGUGAUAACUGAAG
((((((((((((((((((.((((.((......)).))))))))))))))))))))))..

Structure

--                  A    g  cc 
  UCAGUUAUCACAGUGCUG UGCU uc  c
  |||||||||||||||||| |||| ||   
  AGUCAAUAGUGUCAUGAC AUgg ag  a
GA                  -    a  cu 

Annotation confidence High

Genome context

CM001460.1: 1057945-1058003 [+]

Mature oni-miR-101a-5p

• Accession: MIMAT0059395
• Description: Oreochromis niloticus oni-miR-101a-5p mature miRNA
• Sequence: 1 - UCAGUUAUCACAGUGCUGAUGCU - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-101a-3p

• Accession: MIMAT0042720
• Description: Oreochromis niloticus oni-miR-101a-3p mature miRNA
• Sequence: 38 - UACAGUACUGUGAUAACUGAAG - 59
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774