Stem-loop oni-mir-129-1

Accession

MI0034638

Description

Oreochromis niloticus oni-mir-129-1 precursor miRNA

Literature search

2 open access papers mention oni-mir-129-1
(13 sentences)

Sequence

2810968 reads, 1923.0 reads per million, 103 experiments

CUUUUUGCGGUCUGGGCUUGCuguucauaacuauuaaucugggAAGCCCUUACCCCAAAAAGCAU
(((((((.(((..((((((.((..................)).))))))..))).)))))))...

Structure

---       C   CU      G  guucauaa 
   CUUUUUG GGU  GGGCUU Cu        c
   ||||||| |||  |||||| ||         
   GAAAAAC CCA  CCCGAA gg        u
UAC       C   UU      g  ucuaauua 

Annotation confidence High

Genome context

GL831310.1: 1105582-1105646 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-129-1

Mature oni-miR-129-5p

• Accession: MIMAT0059466
• Description: Oreochromis niloticus oni-miR-129-5p mature miRNA
• Sequence: 1 - CUUUUUGCGGUCUGGGCUUGC - 21
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-129-3p

• Accession: MIMAT0059396
• Description: Oreochromis niloticus oni-miR-129-3p mature miRNA
• Sequence: 44 - AAGCCCUUACCCCAAAAAGCAU - 65
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774