Stem-loop oni-mir-338-1

Accession

MI0034641

Description

Oreochromis niloticus oni-mir-338-1 precursor miRNA

Sequence

2522874 reads, 2280.0 reads per million, 111 experiments

AACAACAUCCUGGUGCUGCCUGAGUaguugucacaaacUCCAGCAUCAGUGAUUUUGUUG
(((((.((((((((((((...((((...........))))))))))))).))).))))).

Structure

-     C   -         CCU    aguu 
 AACAA AUC CUGGUGCUG   GAGU    g
 ||||| ||| |||||||||   ||||    u
 UUGUU UAG GACUACGAC   CUca    c
G     U   U         ---    aaca 

Annotation confidence High

Genome context

GL831217.1: 2562558-2562617 [+]

Mature oni-miR-338-1-5p

• Accession: MIMAT0059399
• Description: Oreochromis niloticus oni-miR-338-1-5p mature miRNA
• Sequence: 1 - AACAACAUCCUGGUGCUGCCUGAGU - 25
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-338-3p

• Accession: MIMAT0042724
• Description: Oreochromis niloticus oni-miR-338-3p mature miRNA
• Sequence: 39 - UCCAGCAUCAGUGAUUUUGUUG - 60
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774