miRBase entry: oni-mir-96-2

Stem-loop oni-mir-96-2

Accession

MI0034644

Description

Oreochromis niloticus oni-mir-96-2 precursor miRNA

Literature search

1 open access papers mention oni-mir-96-2
(3 sentences)

Sequence

UUUGGCACUAGCACAUUUUUGCUuuguuucuccucuuuugagcaaucauguguagugccaauau
.(((((((((.(((((..((((((...............))))))..))))))))))))))...

Structure

--U         G     UU      uguuuc 
   UUGGCACUA CACAU  UUGCUu      u
   ||||||||| |||||  ||||||      c
   aaccgugau gugua  aacgag      c
uau         -     cu      uuuucu

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

CM001450.1: 43222351-43222414 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from oni-mir-96-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oni-miR-96

Accession	MIMAT0042725
Description	Oreochromis niloticus oni-miR-96 mature miRNA
Sequence	1 - UUUGGCACUAGCACAUUUUUGCU - 23
Evidence	experimental Illumina [1-2]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381

PubMed ID: 25199625
Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
BMC Genomics (2014) 15:774