Stem-loop oni-mir-18a-1

Accession

MI0034645

Description

Oreochromis niloticus oni-mir-18a-1 precursor miRNA

Sequence

345641 reads, 344.0 reads per million, 105 experiments

UAAGGUGCAUCUAGUGCAGAUAGugaaguagacuagcaccuACUGCCCUAAGUGCUCCUUCUGg
.((((.((((.(((.((((.(((((...........)).))))))).))).)))).))))....

Structure

---U    U    C   U    A   -  aagu 
    AAGG GCAU UAG GCAG UAG ug    a
    |||| |||| ||| |||| ||| ||    g
    UUCC CGUG AUC CGUC Auc ac    a
gGUC    U    A   C    -   c  gauc 

Annotation confidence High

Genome context

GL831311.1: 1393035-1393098 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from oni-mir-18a-1

Mature oni-miR-18a-5p

• Accession: MIMAT0042726
• Description: Oreochromis niloticus oni-miR-18a-5p mature miRNA
• Sequence: 1 - UAAGGUGCAUCUAGUGCAGAUAG - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-18a-3p

• Accession: MIMAT0059404
• Description: Oreochromis niloticus oni-miR-18a-3p mature miRNA
• Sequence: 42 - ACUGCCCUAAGUGCUCCUUCUG - 63
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774