Stem-loop oni-mir-129-4

Accession

MI0034646

Description

Oreochromis niloticus oni-mir-129-4 precursor miRNA

Literature search

2 open access papers mention oni-mir-129-4
(12 sentences)

Sequence

2091042 reads, 1506.0 reads per million, 102 experiments

CUUUUUGCGGUCUGGGCUUGCuguuccuaaggcaguagccaggAAGCCCUUACCCCAAAAAGUAU
(((((((.(((..((((((.(((...(((......))).))).))))))..))).)))))))...

Structure

---       C   CU      G   uuc   ag 
   CUUUUUG GGU  GGGCUU Cug   cua  g
   ||||||| |||  |||||| |||   |||   
   GAAAAAC CCA  CCCGAA gac   gau  c
UAU       C   UU      g   --c   ga 

Annotation confidence High

Genome context

CM001460.1: 20397983-20398047 [-]

Mature oni-miR-129-5p

• Accession: MIMAT0059466
• Description: Oreochromis niloticus oni-miR-129-5p mature miRNA
• Sequence: 1 - CUUUUUGCGGUCUGGGCUUGC - 21
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774