Stem-loop oni-mir-338-2

Accession

MI0034647

Description

Oreochromis niloticus oni-mir-338-2 precursor miRNA

Sequence

2504062 reads, 2348.0 reads per million, 107 experiments

AACAACAUCCUGAUGCUGUUUGGGUguguaaagcagaacUCCAGCAUCAGUGAUUUUGUUG
(((((.((((((((((((...((((.(((...)))..))))))))))))).))).))))).

Structure

-     C   -         UUU    -g   a 
 AACAA AUC CUGAUGCUG   GGGU  ugu  
 ||||| ||| |||||||||   ||||  ||| a
 UUGUU UAG GACUACGAC   CUca  acg  
G     U   U         ---    ag   a 

Annotation confidence High

Genome context

CM001451.1: 9610319-9610379 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-338-2

Mature oni-miR-338-2-5p

• Accession: MIMAT0059400
• Description: Oreochromis niloticus oni-miR-338-2-5p mature miRNA
• Sequence: 1 - AACAACAUCCUGAUGCUGUUUGGGU - 25
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-338-3p

• Accession: MIMAT0042724
• Description: Oreochromis niloticus oni-miR-338-3p mature miRNA
• Sequence: 40 - UCCAGCAUCAGUGAUUUUGUUG - 61
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774